EOSC_hub_MDR_earl_adopter_report.docx

Task

Work

Comment

• Investigate a new mechanism of ECRIN metadata ‘injection’ and upgrading on OneData environment

• Update (provided by OneData team) on OneDataFS library for injecting metadata on OneData is under development.

Not sure whether OneDataFS library will be fully ready (operational) for our usage before EAP will end. Alternative mechanisms (eg. REST API) of files injection aren’t optimal for our needs (slow performance).

Revision of web portal

• Additional requirements for provenance were provided
• Implementation is planned for the end of July

Investigate metadata schema and requirements for future harvesting by B2FIND

• TC with B2FIND/ECRIN, discussing possibilities of cooperation (15.6.2020)
• Exploration of B2FIND for suitability of integration with MDR started (e.g. transfer of trial information from B2FIND to MDR, MDR as such registered in B2FIND, integration of samples)

It may be that the integration of B2FIND into MDR is of very limited use. Possibilities of integration will be discussed and summarised in a short report

other

• Uploading and re-indexing the full dataset (5th data package, planned for July 2020)
• Adaptation of consent categories under construction

Regular metadata reupload and re-injection will be done once per 5-6 weeks starting from the end of July2020.

Additional comments:

Task

Work

Comment

Continue the revision of current web-portal, developed within XDC project in collaboration with OneData (web-portal GUI + OneData Environment) and INFN (ElasticSearch + hardware support).

Testing and upgrading the web-portal with respect to updated ECRIN requirements.

Continued investigation on harvesting by B2FIND

• Depends on the status of the related task in Q1.

other

Additional comments:

Task

Work

Comment

Testing the work produced in Q1 and Q2

Start to develop ElasticSearch-based APIs in collaboration with INFN

• Start to work on it.
• Some of queries are ready and written on JavaScript – will be adapted and re-written on server-side programming language (probably Python 3)

Enable harvesting of a single MDR instance by B2FIND test instance

• Depends on the status of the related task in Q1 and Q2.

other

Additional comments:

Task

Work

Comment

Finalizing the development and integration testing by users.

Support for potential users, including collecting metrics as well as feedback, and feeding back requests for change

Enable harvesting of one or more MDR instances by B2FIND production instance

• Depends on the status of the related task in Q1, Q2 and Q3.

other

Additional comments: